Detailed information of SNP:
|
SNP ID:
sf0808624374(Gbrowse)
Chromosome: chr08 Position: 8624374 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 90.09% | 9.91% |
| All Indica | 784 | 82.91% | 17.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 82.51% | 17.49% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 207 | 75.85% | 24.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808624374 | C->T | INTERGENIC | None |