Detailed information of SNP:
|
SNP ID:
sf0808662285(Gbrowse)
Chromosome: chr08 Position: 8662285 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 98.79% | 1.21% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 480 | 96.88% | 3.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 86 | 89.53% | 10.47% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808662285 | T->C | INTERGENIC | None |