Detailed information of SNP:
|
SNP ID:
sf0808704092(Gbrowse)
Chromosome: chr08 Position: 8704092 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 68.98% | 31.02% |
| All Indica | 794 | 69.65% | 30.35% |
| All Japonica | 495 | 62.83% | 37.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 72.70% | 27.30% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 333 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808704092 | C->A | LOC_Os08g14490(LOC_Os08g14490.1) | INTRON |