Detailed information of SNP:
|
SNP ID:
sf0808720441(Gbrowse)
Chromosome: chr08 Position: 8720441 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 96.79% | 3.21% |
| All Indica | 720 | 94.58% | 5.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 329 | 93.01% | 6.99% |
| Indica II | 203 | 97.04% | 2.96% |
| Indica Intermediate | 188 | 94.68% | 5.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808720441 | G->A | INTERGENIC | None |