Detailed information of SNP:
|
SNP ID:
sf0808727668(Gbrowse)
Chromosome: chr08 Position: 8727668 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 98.25% | 1.75% |
| All Indica | 781 | 100.00% | 0.00% |
| All Japonica | 470 | 94.89% | 5.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 93.25% | 6.75% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808727668 | G->A | INTERGENIC | None |