Detailed information of SNP:
|
SNP ID:
sf0808780523(Gbrowse)
Chromosome: chr08 Position: 8780523 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1327 | 80.78% | 19.22% |
| All Indica | 723 | 89.49% | 10.51% |
| All Japonica | 496 | 69.56% | 30.44% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 312 | 89.10% | 10.90% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 201 | 85.07% | 14.93% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 5 | 20.00% | 80.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808780523 | A->G | INTERGENIC | None |