Detailed information of SNP:
|
SNP ID:
sf0808816081(Gbrowse)
Chromosome: chr08 Position: 8816081 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 78.34% | 21.66% |
| All Indica | 780 | 65.38% | 34.62% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 71.89% | 28.11% |
| Indica II | 206 | 59.71% | 40.29% |
| Indica Intermediate | 204 | 59.31% | 40.69% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808816081 | C->A | INTERGENIC | None |