Detailed information of SNP:
|
SNP ID:
sf0808820106(Gbrowse)
Chromosome: chr08 Position: 8820106 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 79.31% | 20.69% |
| All Indica | 786 | 93.26% | 6.74% |
| All Japonica | 454 | 51.10% | 48.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 86.46% | 13.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 297 | 32.32% | 67.68% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808820106 | T->G | INTERGENIC | None |