Detailed information of SNP:
|
SNP ID:
sf0808820821(Gbrowse)
Chromosome: chr08 Position: 8820821 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 97.44% | 2.56% |
| All Indica | 789 | 95.94% | 4.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808820821 | C->T | INTERGENIC | None |