Detailed information of SNP:
|
SNP ID:
sf0808828842(Gbrowse)
Chromosome: chr08 Position: 8828842 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 97.79% | 2.21% |
| All Indica | 782 | 96.29% | 3.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 204 | 90.69% | 9.31% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808828842 | A->C | LOC_Os08g14670(LOC_Os08g14670.1) | Non-Synonymous SNP |