Detailed information of SNP:
|
SNP ID:
sf0808835778(Gbrowse)
Chromosome: chr08 Position: 8835778 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.82% | 3.18% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808835778 | C->T | INTERGENIC | None |