Detailed information of SNP:
|
SNP ID:
sf0808846699(Gbrowse)
Chromosome: chr08 Position: 8846699 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 798 | 24.31% | 75.69% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 212 | 16.51% | 83.49% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808846699 | A->G | INTERGENIC | None |