Detailed information of SNP:
|
SNP ID:
sf0808860927(Gbrowse)
Chromosome: chr08 Position: 8860927 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.86% | 20.14% |
| All Indica | 796 | 71.73% | 28.27% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 373 | 64.08% | 35.92% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808860927 | C->T | INTERGENIC | None |