Detailed information of SNP:
|
SNP ID:
sf0808868097(Gbrowse)
Chromosome: chr08 Position: 8868097 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 95.05% | 4.95% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808868097 | G->A | LOC_Os08g14744(LOC_Os08g14744.1) | Non-Synonymous SNP |