Detailed information of SNP:
|
SNP ID:
sf0808905953(Gbrowse)
Chromosome: chr08 Position: 8905953 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.54% | 39.46% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808905953 | A->G | LOC_Os08g14810(LOC_Os08g14810.1) | INTRON |