Detailed information of SNP:
|
SNP ID:
sf0808931462(Gbrowse)
Chromosome: chr08 Position: 8931462 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.17% | 12.83% |
| All Indica | 799 | 82.10% | 17.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808931462 | A->T | INTERGENIC | None |