Detailed information of SNP:
|
SNP ID:
sf0808933065(Gbrowse)
Chromosome: chr08 Position: 8933065 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.36% | 10.64% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808933065 | A->T | INTERGENIC | None |