Detailed information of SNP:
|
SNP ID:
sf0808947496(Gbrowse)
Chromosome: chr08 Position: 8947496 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 52.34% | 47.66% |
| All Indica | 798 | 28.82% | 71.18% |
| All Japonica | 494 | 91.30% | 8.70% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 375 | 39.73% | 60.27% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 210 | 24.76% | 75.24% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808947496 | A->G | LOC_Os08g14850(LOC_Os08g14850.1) | INTRON |