Detailed information of SNP:
|
SNP ID:
sf0808954881(Gbrowse)
Chromosome: chr08 Position: 8954881 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 59.11% | 40.89% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808954881 | T->C | LOC_Os08g14860(LOC_Os08g14860.1) | Non-Synonymous SNP |
| sf0808954881 | T->C | LOC_Os08g14860(LOC_Os08g14860.4) | Non-Synonymous SNP |
| sf0808954881 | T->C | LOC_Os08g14860(LOC_Os08g14860.2) | Non-Synonymous SNP |
| sf0808954881 | T->C | LOC_Os08g14860(LOC_Os08g14860.5) | Non-Synonymous SNP |
| sf0808954881 | T->C | LOC_Os08g14860(LOC_Os08g14860.3) | Non-Synonymous SNP |