Detailed information of SNP:
|
SNP ID:
sf0809078911(Gbrowse)
Chromosome: chr08 Position: 9078911 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1299 | 94.69% | 5.31% |
| All Indica | 792 | 100.00% | 0.00% |
| All Japonica | 385 | 82.08% | 17.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 254 | 72.83% | 27.17% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809078911 | C->T | INTERGENIC | None |