Detailed information of SNP:
|
SNP ID:
sf0809103766(Gbrowse)
Chromosome: chr08 Position: 9103766 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.11% | 49.89% |
| All Indica | 799 | 32.92% | 67.08% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809103766 | G->A | LOC_Os08g15060(LOC_Os08g15060.1) | INTRON |