Detailed information of SNP:
|
SNP ID:
sf0809142050(Gbrowse)
Chromosome: chr08 Position: 9142050 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 86.00% | 14.00% |
| All Indica | 793 | 99.24% | 0.76% |
| All Japonica | 492 | 61.79% | 38.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 48.19% | 51.81% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809142050 | A->C | INTERGENIC | None |