Detailed information of SNP:
|
SNP ID:
sf0809148909(Gbrowse)
Chromosome: chr08 Position: 9148909 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 51.10% | 48.90% |
| All Indica | 762 | 70.08% | 29.92% |
| All Japonica | 476 | 11.97% | 88.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 66.57% | 33.43% |
| Indica II | 204 | 72.55% | 27.45% |
| Indica Intermediate | 199 | 73.87% | 26.13% |
| Temperate Japonica | 326 | 6.75% | 93.25% |
| Tropical Japonica | 87 | 25.29% | 74.71% |
| Japonica Intermediate | 63 | 20.63% | 79.37% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809148909 | T->C | INTERGENIC | None |