Detailed information of SNP:
|
SNP ID:
sf0809149808(Gbrowse)
Chromosome: chr08 Position: 9149808 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 50.18% | 49.82% |
| All Indica | 762 | 30.31% | 69.69% |
| All Japonica | 481 | 89.40% | 10.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 362 | 32.60% | 67.40% |
| Indica II | 203 | 30.05% | 69.95% |
| Indica Intermediate | 197 | 26.40% | 73.60% |
| Temperate Japonica | 327 | 94.80% | 5.20% |
| Tropical Japonica | 90 | 74.44% | 25.56% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809149808 | A->G | INTERGENIC | None |