Detailed information of SNP:
|
SNP ID:
sf0809151998(Gbrowse)
Chromosome: chr08 Position: 9151998 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 67.60% | 32.40% |
| All Indica | 779 | 54.94% | 45.06% |
| All Japonica | 490 | 96.73% | 3.27% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 364 | 54.12% | 45.88% |
| Indica II | 210 | 56.67% | 43.33% |
| Indica Intermediate | 205 | 54.63% | 45.37% |
| Temperate Japonica | 329 | 99.09% | 0.91% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809151998 | A->G | LOC_Os08g15100(LOC_Os08g15100.1) | INTRON |