Detailed information of SNP:
|
SNP ID:
sf0809152215(Gbrowse)
Chromosome: chr08 Position: 9152215 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 68.44% | 31.56% |
| All Indica | 781 | 56.34% | 43.66% |
| All Japonica | 490 | 96.73% | 3.27% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 364 | 56.04% | 43.96% |
| Indica II | 210 | 56.67% | 43.33% |
| Indica Intermediate | 207 | 56.52% | 43.48% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809152215 | G->A | LOC_Os08g15100(LOC_Os08g15100.1) | INTRON |