Detailed information of SNP:
|
SNP ID:
sf0809153274(Gbrowse)
Chromosome: chr08 Position: 9153274 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 92.27% | 7.73% |
| All Indica | 774 | 92.38% | 7.62% |
| All Japonica | 479 | 91.86% | 8.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 92.39% | 7.61% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 322 | 89.44% | 10.56% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809153274 | A->G | LOC_Os08g15100(LOC_Os08g15100.1) | INTRON |