Detailed information of SNP:
|
SNP ID:
sf0809154986(Gbrowse)
Chromosome: chr08 Position: 9154986 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 86.25% | 13.75% |
| All Indica | 768 | 82.94% | 17.06% |
| All Japonica | 486 | 89.30% | 10.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 360 | 81.39% | 18.61% |
| Indica II | 205 | 83.41% | 16.59% |
| Indica Intermediate | 203 | 85.22% | 14.78% |
| Temperate Japonica | 328 | 96.65% | 3.35% |
| Tropical Japonica | 91 | 67.03% | 32.97% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809154986 | T->C | INTERGENIC | None |