Detailed information of SNP:
|
SNP ID:
sf0809155320(Gbrowse)
Chromosome: chr08 Position: 9155320 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 89.32% | 10.68% |
| All Indica | 775 | 94.71% | 5.29% |
| All Japonica | 482 | 81.33% | 18.67% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 366 | 93.99% | 6.01% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 326 | 88.65% | 11.35% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 63 | 69.84% | 30.16% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809155320 | C->T | LOC_Os08g15120(LOC_Os08g15120.1) | Non-Synonymous SNP |