Detailed information of SNP:
|
SNP ID:
sf0809162563(Gbrowse)
Chromosome: chr08 Position: 9162563 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 83.08% | 16.92% |
| All Indica | 783 | 95.66% | 4.34% |
| All Japonica | 485 | 59.79% | 40.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 329 | 45.90% | 54.10% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809162563 | G->T | LOC_Os08g15130(LOC_Os08g15130.1) | INTRON |