Detailed information of SNP:
|
SNP ID:
sf0809211460(Gbrowse)
Chromosome: chr08 Position: 9211460 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 798 | 68.17% | 31.83% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809211460 | A->G | INTERGENIC | None |