Detailed information of SNP:
|
SNP ID:
sf0809212669(Gbrowse)
Chromosome: chr08 Position: 9212669 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 79.16% | 20.84% |
| All Indica | 794 | 87.41% | 12.59% |
| All Japonica | 490 | 61.43% | 38.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 80.59% | 19.41% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 332 | 47.29% | 52.71% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809212669 | A->G | LOC_Os08g15220(LOC_Os08g15220.1) | Non-Synonymous SNP |