Detailed information of SNP:
|
SNP ID:
sf0809215176(Gbrowse)
Chromosome: chr08 Position: 9215176 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.75% | 3.25% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809215176 | C->T | LOC_Os08g15220(LOC_Os08g15220.1) | Synonymous |