Detailed information of SNP:
|
SNP ID:
sf0809237972(Gbrowse)
Chromosome: chr08 Position: 9237972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 97.78% | 2.22% |
| All Indica | 780 | 100.00% | 0.00% |
| All Japonica | 446 | 93.27% | 6.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 90.07% | 9.93% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809237972 | C->T | INTERGENIC | None |