Detailed information of SNP:
|
SNP ID:
sf0809298623(Gbrowse)
Chromosome: chr08 Position: 9298623 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 27.73% | 72.27% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809298623 | T->C | LOC_Os08g15290(LOC_Os08g15290.1) | Non-Synonymous SNP |