Detailed information of SNP:
|
SNP ID:
sf0809299707(Gbrowse)
Chromosome: chr08 Position: 9299707 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1203 | 96.34% | 3.66% |
| All Indica | 612 | 93.14% | 6.86% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 44 | 95.45% | 4.55% |
| Indica I | 263 | 91.63% | 8.37% |
| Indica II | 197 | 95.43% | 4.57% |
| Indica Intermediate | 152 | 92.76% | 7.24% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809299707 | G->A | LOC_Os08g15290(LOC_Os08g15290.1) | INTRON |