Detailed information of SNP:
|
SNP ID:
sf0809307954(Gbrowse)
Chromosome: chr08 Position: 9307954 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.54% | 47.46% |
| All Indica | 798 | 29.32% | 70.68% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809307954 | T->C | LOC_Os08g15310(LOC_Os08g15310.1) | Non-Synonymous SNP |