Detailed information of SNP:
|
SNP ID:
sf0809320614(Gbrowse)
Chromosome: chr08 Position: 9320614 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 797 | 82.31% | 17.69% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 75.60% | 24.40% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809320614 | T->A | INTERGENIC | None |