Detailed information of SNP:
|
SNP ID:
sf0809342843(Gbrowse)
Chromosome: chr08 Position: 9342843 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.29% | 31.71% |
| All Indica | 799 | 51.44% | 48.56% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809342843 | C->G | INTERGENIC | None |