Detailed information of SNP:
|
SNP ID:
sf0809345331(Gbrowse)
Chromosome: chr08 Position: 9345331 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 80.43% | 19.57% |
| All Indica | 791 | 72.19% | 27.81% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 367 | 67.30% | 32.70% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809345331 | A->G | INTERGENIC | None |