Detailed information of SNP:
|
SNP ID:
sf0809363768(Gbrowse)
Chromosome: chr08 Position: 9363768 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 97.18% | 2.82% |
| All Indica | 766 | 95.69% | 4.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 358 | 96.65% | 3.35% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809363768 | G->A | LOC_Os08g15370(LOC_Os08g15370.1) | Non-Synonymous SNP |