Detailed information of SNP:
|
SNP ID:
sf0809368527(Gbrowse)
Chromosome: chr08 Position: 9368527 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 97.19% | 2.81% |
| All Indica | 777 | 95.88% | 4.12% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 365 | 96.16% | 3.84% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809368527 | A->T | LOC_Os08g15390(LOC_Os08g15390.1) | INTRON |