Detailed information of SNP:
|
SNP ID:
sf0809372034(Gbrowse)
Chromosome: chr08 Position: 9372034 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 72.04% | 27.96% |
| All Indica | 760 | 55.00% | 45.00% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 348 | 52.30% | 47.70% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 202 | 39.11% | 60.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809372034 | G->A | LOC_Os08g15400(LOC_Os08g15400.1) | Non-Synonymous SNP |