Detailed information of SNP:
|
SNP ID:
sf0809373954(Gbrowse)
Chromosome: chr08 Position: 9373954 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 69.37% | 30.63% |
| All Indica | 775 | 52.65% | 47.35% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 358 | 47.49% | 52.51% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 204 | 40.69% | 59.31% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809373954 | C->A | INTERGENIC | None |