Detailed information of SNP:
|
SNP ID:
sf0809418413(Gbrowse)
Chromosome: chr08 Position: 9418413 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 63.80% | 36.20% |
| All Indica | 729 | 73.39% | 26.61% |
| All Japonica | 467 | 51.18% | 48.82% |
| Aus | 58 | 51.72% | 48.28% |
| Indica I | 335 | 73.13% | 26.87% |
| Indica II | 198 | 73.74% | 26.26% |
| Indica Intermediate | 196 | 73.47% | 26.53% |
| Temperate Japonica | 322 | 41.30% | 58.70% |
| Tropical Japonica | 80 | 77.50% | 22.50% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809418413 | C->T | LOC_Os08g15480(LOC_Os08g15480.1) | INTRON |