Detailed information of SNP:
|
SNP ID:
sf0809441165(Gbrowse)
Chromosome: chr08 Position: 9441165 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 95.09% | 4.91% |
| All Indica | 775 | 92.13% | 7.87% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 199 | 94.47% | 5.53% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809441165 | C->T | INTERGENIC | None |