Detailed information of SNP:
|
SNP ID:
sf0809441893(Gbrowse)
Chromosome: chr08 Position: 9441893 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 95.22% | 4.78% |
| All Indica | 783 | 95.27% | 4.73% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 368 | 98.10% | 1.90% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809441893 | T->G | LOC_Os08g15520(LOC_Os08g15520.1) | INTRON |