Detailed information of SNP:
|
SNP ID:
sf0809460407(Gbrowse)
Chromosome: chr08 Position: 9460407 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 94.33% | 5.67% |
| All Indica | 758 | 92.35% | 7.65% |
| All Japonica | 487 | 99.38% | 0.62% |
| Aus | 59 | 74.58% | 25.42% |
| Indica I | 356 | 93.26% | 6.74% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 192 | 87.50% | 12.50% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809460407 | C->T | LOC_Os08g15560(LOC_Os08g15560.1) | INTRON |