Detailed information of SNP:
|
SNP ID:
sf0809530580(Gbrowse)
Chromosome: chr08 Position: 9530580 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 50.75% | 49.25% |
| All Indica | 791 | 45.26% | 54.74% |
| All Japonica | 492 | 63.01% | 36.99% |
| Aus | 62 | 53.23% | 46.77% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 205 | 37.07% | 62.93% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 332 | 85.54% | 14.46% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809530580 | C->T | INTERGENIC | None |