Detailed information of SNP:
|
SNP ID:
sf0809539078(Gbrowse)
Chromosome: chr08 Position: 9539078 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 54.96% | 45.04% |
| All Indica | 799 | 66.58% | 33.42% |
| All Japonica | 481 | 32.02% | 67.98% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 329 | 12.16% | 87.84% |
| Tropical Japonica | 85 | 84.71% | 15.29% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809539078 | A->G | INTERGENIC | None |